They both have 16.5DPS. Therefore, their unstyled damage over time will be exactly the same.
There will, however, be a difference in their styled damage over time. I recommend that you look at this calculator and plug in your character's numbers:
The closer you can get your swing-speed to the 1.5 second cap, the better. This will allow your additional style damage to come as fast as possible and, therefore, maximise your damage output over time. If the faster of the two weapons does not let you reach the 1.5s swing-speed cap, then use the faster weapon. If you hit the 1.5s cap with the faster weapon, use a slower weapon until you are exactly at the 1.5s swing-speed cap. By calculating your real swing-speed with each weapon, you'll be in a better position to decide which thruster will give you maximum damage over time.
The short summary is: Use the slowest weapon that allows you to hit (or come closest to) the 1.5s swing-speed cap.
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